I tried as hard as possible to make it reproducible, which it is on my computer. I would be happy to see if this still works on other computers. Moreover, by allowing easy reproducibility, I hope that other people may easily build research on top of this work.
The code and data are both on GitHub. The paper has been published in Wellcome Open Research and has been replicated by multiple other authors.
I tried hard to make this paper as reproducible as possible, but as techniques and dependencies become more complex, it is hard to make it 100% clear. Any form of feedback is more than welcome.