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  • PolyHoop: Soft particle and tissue dynamics with topological transitions

    Authors: Roman Vetter, Steve V. M. Runser, Dagmar Iber
    DOI: 10.1016/j.cpc.2024.109128
    Submitted by rvetter    
    Number of reviews:   1
    Why should we attempt to reproduce this paper?

    There is a numerical benchmark reported in Fig. 4 with absolute runtimes and memory usages that can directly be reproduced with the provided source code. The benchmark was performed on the author's computer, and since numerical performance and parallel scaling can be somewhat hardware-dependent, it would be of interest to see whether a performance that is comparable to the one reported in the paper can be reproduced by others on their own computers in practice. The benchmark simulates a growing tissue from one to 10,000 cells in just ten minutes, so this offers an easy entry point into tissue modeling and simulation. No input data is needed to reproduce the output. The program has no dependencies.

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