I tried hard to make it reproducible, so hopefully this paper can serve as an example on how reproducibility can be achieved. I think that being reproducible with only few commands to type in a terminal is quite an achievment. At least in my field, where I usually see code published along with paper, but with almost no documentation on how to rerun it.
I tried hard to make this paper as reproducible as possible, but as techniques and dependencies become more complex, it is hard to make it 100% clear. Any form of feedback is more than welcome.
I guess it could be a cool learning experience. The paper is written with knitr, uses a seed, is part of the R package it describes, was openly written using version control (SVN, R-Forge) and is available in an open access journal (@up_jors).