Papers



Submit a Paper!

Browse ReproHack papers

  • What do analyses of city size distributions have in common?

    Authors: Clémentine Cottineau
    DOI: 10.1007/s11192-021-04256-8
    Submitted by clementinecottineau      
      Mean reproducibility score:   8.0/10   |   Number of reviews:   1
    Why should we attempt to reproduce this paper?

    This article was meant to be entirely reproducible, with the data and code published alongside the article. It is however not embedded within a container (e.g. Docker). Will it past the reproducibility test tomorrow? next year? I'm curious.

  • Droplet impact onto a spring-supported plate: analysis and simulations

    Authors: Michael J. Negus, Matthew R. Moore, James M. Oliver, Radu Cimpeanu
    DOI: https://doi.org/10.1007/s10665-021-10107-5
    Submitted by MNegus      
      Mean reproducibility score:   8.0/10   |   Number of reviews:   1
    Why should we attempt to reproduce this paper?

    The direct numerical simulations (DNS) for this paper were conducted using Basilisk (http://basilisk.fr/). As Basilisk is a free software program written in C, it can be readily installed on any Linux machine, and it should be straightforward to then run the driver code to re-produce the DNS from this paper. Given this, the numerical solutions presented in this paper are a result of many high-fidelity simulations, which each took approximately 24 CPU hours running between 4 to 8 cores. Hence the difficulty in reproducing the results should mainly be in the amount of computational resources it would take, so HPC resources will be required. The DNS in this paper were used to validate the presented analytical solutions, as well as extend the results to a longer timescale. Reproducing these numerical results will build confidence in these results, ensuring that they are independent of the system architecture they were produced on.

  • Analytical solutions for the isobaric evaporation of pure cryogens in storage tanks

    Authors: Felipe Huerta, Velisa Vesovic,
    DOI: 10.1016/j.ijheatmasstransfer.2019.118536
    Submitted by hub-admin    

    Why should we attempt to reproduce this paper?

    1. Because it contains customized numerical methods to implement analytical solutions for an engineering problem relevant to cryogenic storage. This will become increasingly relevant in the future with the increase in the use of liquid hydrogen and LNG as fuel. 2. The storage tank is implemented as a Class and there is an opportunity to understand the object oriented programming mindset of the authors. 3. In the provided Jupyter Notebook, thermodynamic data for nitrogen and methane are provided which enable the users the quick implementation. 4. To reproduce some of the figures and results, the storage tanks need to be modified with inputs available in the paper.

    Tags: Python Matlab
  • Good Me Bad Me: Prioritization of the Good-Self During Perceptual Decision-Making

    Authors: Hu, C.-P., Lan, Y., Macrae, C. N., & Sui, J.
    DOI: 10.1525/collabra.301
    Submitted by hub-admin    
      Mean reproducibility score:   7.0/10   |   Number of reviews:   1
    Why should we attempt to reproduce this paper?

    It'll a great helpful to independently check the scientific record I've published, so that errors, if there are any, could be corrected. Also, I will learn how to share the data in a more accessible to other if you could give me feedback.

    Tags: Python R Matlab
  • Cell Contractility Facilitates Alignment of Cells and Tissues to Static Uniaxial Stretch

    Authors: Rens, E. G., & Merks, R. M. H.
    Submitted by hub-admin    
      Mean reproducibility score:   1.0/10   |   Number of reviews:   2
    Why should we attempt to reproduce this paper?

    This paper shows a fun and interesting simulation result. I find it (of course) very important that our results are reproducible. In this paper, however, we did not include the exact code for these specific simulations, but the results should be reproducible using the code of our previous paper in PLOS Computational Biology (Van Oers, Rens et al. https://doi.org/10.1371/journal.pcbi.1003774). I am genuinely curious to see if there is sufficient information for the Biophys J paper or if we should have done better. Other people have already successfully built upon the 2014 (PLOS) paper using our code; see e.g., https://journals.aps.org/pre/abstract/10.1103/PhysRevE.97.012408 and https://doi.org/10.1101/701037).

    Tags: C Matlab

Search for papers

Filter by tags

Python R GDAL GEOS GIS Shiny PROJ Galaxies Astronomy HPC Databases Binder Social Science Stata make Computer Science Jupyter Notebook tidyverse emacs literate earth sciences clumped isotopes org-mode geology eyetracking LaTeX Git ArcGIS Docker Drake SVN knitr C Matlab Mathematica Meta-analysis swig miniconda tensorflow keras Pandas SQL neuroscience robotics deep learning planner reiforcement learning Plasma physics Hybrid-PIC EPOCH Laser Gamma-ray X-ray radiation Petawatt Fortran plasma PIC physics Monte Carlo Atomistic Simulation LAMMPS Electron Transport DFT descriptors interatomic potentials machine learning Molecular Dynamics Python scripting AIRSS structure prediction density functional theory high-throughput machine-learning RNA bioinformatics CFD Fluid Dynamics OpenFOAM C++ DNS Mathematics Droplets Basilisk Particle-In-Cell psychology Stan Finance SAS Replication crisis Economics Malaria consumer behavior number estimation mental arithmetic psychophysics Archaeology Precipitation Epidemiology Parkrun Health Health Economics HTA plumber science of science Zipf networks city size distribution urbanism literature review Preference Visual Questionnaire Mann-Whitney Correlation Conceptual replication Cognitive psychology Multinomial processing tree (MPT) modeling #urbanism #R k-means cluster analysis city-regions Urban Knowledge Systems Topic modelling Planning Support Systems All tags Clear tags

Key

  Associated with an event
  Available for general review
  Public reviews welcome