Clustering of promoter sequences with a probabilistic partitioning approach using R software. Scripts for generating the results are provided at https://github.com/talponer/humanDPE/. Also included are scripts for generating the Figures of the papers from the numerical results.
(In addition, the paper present confirmatory experimental results not subject to computational reprodicibility.)
The methods are widely applicable to other DNA sequence clustering problems.
Someone may obtain contradicting results with a new algorithm. In such a case, rerunning our scripts on the same or new data may help elucidate the source of the differences between the results.
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