Open Data Science Summer School - Wellcome Trust DTC in PHEDS

Open Data Science Summer School - Wellcome Trust DTC in PHEDS

      Aug. 4, 2022, 9 a.m. - Aug. 4, 2022, 4 p.m. (Europe/London)

   New Bath Hotel, New Bath Rd, Matlock, DE4 3PX, United Kingdom

Hosted by: David Wilby


Event submitted by: davidwilby on June 15, 2022, 10:37 a.m.

Event Description

As part of the Open Data Science Summer School for the Wellcome Trust Doctoral Training Centre for public health, economics, and decision science there will be a one-day reprohack event for attendees to attempt to reproduce research results.

Please note: This is a closed event and not open to public registration.


Two ways to get involved:

Nominate or Contribute a paper

We invite nominations for papers that have both associated code and data publicly available. We also encourage analyses based on open source tools as we cannot guarantee participants will have access to specialised licenced software.

See list below for paper associated with this event or browse the full list of submitted papers. You can also consult our author guidelines for more information.

Disclaimer

We are all excited by the progress made by authors in making their papers reproducible by publishing associated code and data.

We know how challenging it can be so we want to showcase the value of the practice, both for original authors and as a learning experience for those who attempt to reproduce the work.

It’s important to highlight that our events are by no means an attempt to criticise or discredit work. We see reproduction as beneficial scientific activity in itself, with useful outcomes for authors and valuable learning experiences for the participants and the research community as a whole.

Review and reproduce a paper

Join us at the hack to dig into exciting science, learn more about reproducibility, working with other people’s code and data and more!

By joining our event, you agree to abide by our Code of Conduct


Agenda (TBC)

Time Event
09:00 Welcome and Orientation
09:10 TALK: David Wilby: Research Reproducibility.
09:45 Tips and Tricks for Reproducing and Reviewing.
10:10 Select Papers, Chat and coffee
11:30 Round I of ReproHacking
12:15 Re-group and sharing of experiences
12:30 LUNCH
13:30 Round II of ReproHacking
14:45 Coffee break
15:00 Round III of ReproHacking - Complete Feedback form
16:00 TALK: Bob Turner: Software Licensing.
16:25 Re-group and sharing of experiences
16:50 Feedback and Closing

On the day

We’ll track of discussions and collaborative notes on the event hackpad

As all ReproHack events, we strive to make this event open and inclusive to all. As such the event is governed by the ReproHack Code of Conduct.Please read it before participating. By participating, you are expected to uphold this code.

Authors

We encourage authors that are keen and submitting to a specific event, to engage with the event, even just to say hello! You can do so on twitter (check for event specific hashtags or use @ReproHack) or by joining the review-chat channel in our slack group. We’ve also set up an authors channel in our slack group as a place where you can reach the organisers prior to the hack.

Participants

Introduction & Welcome

1. Project review and team formation

We’ll start with a brief review of the available papers and then form into teams. Feel free to work on your own if you prefer but we highly recommend you discuss your experiences with fellow participants as you work.

2. Select and register a paper

  • Add your details in the participants section of the hackpad so we have a complete list of participants (e.g name, affiliation, social links, pronouns etc).

  • In your teams, (or individually if you prefer) decide which paper you wish to work on.

  • Create user accounts on the Hub for all reviewers that want to be associated with the review.

  • Register your team and paper by logging the title of the selected paper and the name(s) of the reviewer(s) in the hackpad. You can use the following template:

    ### **Paper:** <Title of the paper reproduced>
    **Reviewers:** Reviewer 1, Reviewer 2 etc.
    

3. Work on your paper!

Follow any instructions/documentation associated with the papers and try and reproduce the work. As you work through your paper, keep in mind the main points on which feedback to the authors will provided, Access, Reproducibility, Documentation and Reusability (see our participant guidelines for more information). It might help to have a look at the Review form before you begin and keep notes during your review. Feel free to use the event hackpad to record general findings you wish to share with the group.

We’ll come together during the day to discuss progress and troubleshoot any sticking points.

Should you finish reproducing your paper quickly, feel free to explore the work more deeply. For example, you could try and run additional analyses, create new plots or even combine materials with your own or other open materials available on the web!

Should you produce any additional materials relating to your reproduction during the session (e.g. a markdown report, jupyter notebook, issue or pull requets in authors repository), feel free to share it publicly and add any links to such materials to the hackpad.

4. Complete your Review with feedback for the authors

The most important part of the day is recording our experiences as feedback to the authors. Please make sure to complete a Review feedback form for the paper you've selected, ideally, by the end of the day. Please also remember to be kind and constructive. Reproducibilty is hard and all authors submitting their papers have been incredibly brave. Feel free to browse any public feedback submissions to get inspiration.

5. Feedback to the group on your experiences

You can use the hackpad to take notes and summarise your experiences.

6. Closing Remarks


Collaborative note taking:

Feel free to contribute any additional thoughts on our collaborative hackpad. These can help form the basis for a blogpost on the event.

Associated papers

No associated papers